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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013637274.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 180aa MW: 20118.7 Da PI: 5.191 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.4 | 2.1e-37 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C +Ck+lrrkC+++Cv+apyf+ e+ +++f ++hk+FGasn +kl+++lp ++r +a++++ yeA+ r++dP+yG+v+ i++lqqq+ +l+a++ XP_013637274.1 7 PCGGCKFLRRKCVEGCVFAPYFCYEEgSANFGAIHKVFGASNFSKLISNLPVHDRCEAVRTISYEAQSRLHDPIYGCVSQIFSLQQQVVSLQAQV 101 7***********************9979******************************************************************* PP DUF260 95 allkee 100 +ll+e+ XP_013637274.1 102 VLLREQ 107 *99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.809 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.7E-35 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MGGLGSPCGG CKFLRRKCVE GCVFAPYFCY EEGSANFGAI HKVFGASNFS KLISNLPVHD 60 RCEAVRTISY EAQSRLHDPI YGCVSQIFSL QQQVVSLQAQ VVLLREQASR KFPQEDCMEQ 120 GKVLAQDMPQ DLHSWFNHVV SDSNLNQMSD VASTSMDCNE SFCSSNESLY YPESMFPWSV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473850 | 1e-143 | AB473850.1 Arabidopsis thaliana ASL17 mRNA for ASYMMETRIC LEAVES2-like 17 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013637274.1 | 1e-133 | PREDICTED: LOB domain-containing protein 14 | ||||
Refseq | XP_013682592.1 | 1e-133 | PREDICTED: LOB domain-containing protein 14-like | ||||
Swissprot | Q9SJW5 | 1e-100 | LBD14_ARATH; LOB domain-containing protein 14 | ||||
TrEMBL | A0A078GDX9 | 1e-133 | A0A078GDX9_BRANA; BnaC04g13650D protein | ||||
TrEMBL | A0A0D3BT66 | 1e-133 | A0A0D3BT66_BRAOL; Uncharacterized protein | ||||
STRING | Bra018260.1-P | 1e-123 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31310.1 | 7e-84 | LOB domain-containing protein 14 |